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Scripts and Command Line

For scripts:

Save code as text file in the path where Pymol is running, and name it xxx.py.
Load it into Pymol by typing  run xxx.py in Pymol command line.
Depending on the script, this will add the specific command to the command line from now on.

http://www.pymolwiki.org/index.php/Category:Script_Library
Command line: